Stem-loop sequence gma-MIR1535a

Accession

MI0007257 (change log)

Previous IDs

gma-MIR1535

Description

Glycine max miR1535 stem-loop

Literature search

1 open access papers mention gma-MIR1535a
(1 sentences)

Stem-loop

   uaa    c                     -     aaagaa   agagug 
5'    gagg cuagacaucaccacaaacaag ucacc      gga      u
      |||| ||||||||||||||||||||| |||||      |||       
3'    uucc gaucuguagugguguuuguuc agugg      ccu      c
   ucc    a                     u     -----g   aagaca 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr19: 43989978-43990073 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gma-MIR1535a

• gma-MIR1535b: chr19: 43989927-43990016 [-]
• gma-MIR1535a: chr19: 43989978-43990073 [+]
• gma-MIR160c: chr19: 43999110-43999200 [-]

Database links

• miRBase Tracker:MI0007257

Mature sequence gma-miR1535a

• Accession: MIMAT0007398
• Previous IDs: gma-miR1535
• Sequence: 68 - cuuguuuguggugaugucu - 86
• Evidence: experimental; 454 [1]

References

1. PMID:18402695 "Novel and nodulation-regulated microRNAs in soybean roots" Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O BMC Genomics. 9:160(2008).