miRBase entry: gma-MIR1524

Stem-loop gma-MIR1524


Accession
MI0007241
Description
Glycine max gma-MIR1524 precursor miRNA


Sequence

gcgacuuauuggaguucauucuucgcacucucucggaaaccacuuguuuccaaucaucuaaucagacgauagcagacucaagaaagacguuuccuucccagauccuucuagaccauuugcaaaccgucuccuuccccgaauccauucuccaaacccucgauccuugaggagcuccaccaccgugacggcgcuccggucuccgccgucaauugugccgucgcgguggagcaugagcgucuucaugagucugaaagggaauuauaggaacuacuuuccugauuagguuauuggaaacaagugguuucCGAGUCCGAGGAAGGAACUCCaacgcccaac
(((.....(((((((((.(((((((......(((((((((((((((((((((((.((((((((.........((((((((.(((.(((((((.......(((....)))((((............))))........(((....))).......((((((...)))))).((((((((...((((((((((..((((....))))......))))))))))))))))))..)))))))))).))))))))..((((((...(((...))).)))))))))))))).)))))))))))))))))))))))..))))))).)))))))))))).....

Structure
-----   acuua         a       cacucu                       c        ------------------agacgauag        a   a       ccuucccagauccuucuagaccauuugcaaaccgucuccuuccccgaauccauucuccaaacccucgauccuugagga        acc          ----uc    c 
     gcg     uuggaguuc uucuucg      cucggaaaccacuuguuuccaau aucuaauc                           cagacuca gaa gacguuu                                                                              gcuccacc   gugacggcgc      cggu u
     |||     ||||||||| |||||||      ||||||||||||||||||||||| ||||||||                           |||||||| ||| |||||||                                                                              ||||||||   ||||||||||      ||||  
     cgc     aaCCUCAAG AAGGAGC      GAGCcuuuggugaacaaagguua uggauuag                           gucugagu cuu cugcgag                                                                              cgaggugg   cgcugccgug      gccg c
caacc   -----         G       ----CU                       u        uccuuucaucaaggauauuaagggaaa        a   -       ----------------------------------------------------------------------------ua        ---          uuaacu    c 


Annotation confidence Not enough data
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Genome context
chr8: 3718555-3718890 [+]

Database links

Mature gma-miR1524

Accession MIMAT0007385
Description Glycine max gma-miR1524 mature miRNA
Sequence 306 - CGAGUCCGAGGAAGGAACUCC - 326
Evidence experimental
454 [1]

References

  1. PubMed ID: 18402695
    Novel and nodulation-regulated microRNAs in soybean roots
    Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
    BMC Genomics (2008) 9:160