Stem-loop gma-MIR1513a

Accession

MI0007225

Description

Glycine max gma-MIR1513a precursor miRNA

Gene family

MIPF0001360; MIR1513

Literature search

2 open access papers mention gma-MIR1513a
(6 sentences)

Sequence

ggaucagauaUGAGAGAAAGCCAUGACUUACacacacauugaaaucuuaguUUUAAAUGUGUAUAAGUCAUGGUuuucucucauaucuaaucc
((((.(((((((((((((((((((((((((.(((((..(((((((....))))))).))))).))))))))))))))))))))))))).))))

Structure

    c                         C     ca       c 
ggau agauaUGAGAGAAAGCCAUGACUUA acaca  uugaaau u
|||| ||||||||||||||||||||||||| |||||  |||||||  
ccua ucuauacucucuuuUGGUACUGAAU UGUGU  AAUUUug u
    a                         A     -A       a 

Annotation confidence Not enough data

Genome context

chr7: 43192197-43192289 [+]

Mature gma-miR1513a-5p

• Accession: MIMAT0007371
• Description: Glycine max gma-miR1513a-5p mature miRNA
• Sequence: 11 - UGAGAGAAAGCCAUGACUUAC - 31
• Evidence: experimental ; 454 [1], Northern [1]

Mature gma-miR1513a-3p

• Accession: MIMAT0020936
• Description: Glycine max gma-miR1513a-3p mature miRNA
• Sequence: 52 - UUUAAAUGUGUAUAAGUCAUGGU - 74
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160


2. PubMed ID: 21751852
   Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
   "Radwan O, Liu Y, Clough SJ"
   "Mol Plant Microbe Interact (2011) 24:958-972