Stem-loop csa-mir-216a

Accession

MI0007201

Description

Ciona savignyi csa-mir-216a precursor miRNA

Gene family

MIPF0000054; mir-216

Literature search

1 open access papers mention csa-mir-216a
(1 sentences)

Sequence

ugucccggcucauucUAAUCUCAGCUGGCAAUCUGUGAuuggcugaaaaucacagaugcagaugggauucugaugagucggga
..((((((((((((..(((((((.(((.((.(((((((((.......)))))))))))))).)))))))..))))))))))))

Structure

ug            cU       G   G  A         gg 
  ucccggcucauu  AAUCUCA CUG CA UCUGUGAuu  c
  ||||||||||||  ||||||| ||| || |||||||||  u
  agggcugaguag  uuagggu gac gu agacacuaa  g
--            uc       a   -  -         aa 

Annotation confidence Not enough data

Genome context

reftig_16: 3925105-3925187 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from csa-mir-216a

Mature csa-miR-216a

• Accession: MIMAT0006134
• Description: Ciona savignyi csa-miR-216a mature miRNA
• Sequence: 16 - UAAUCUCAGCUGGCAAUCUGUGA - 38
• Evidence: not_experimental

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080