Stem-loop csa-let-7d

Accession

MI0007185

Description

Ciona savignyi csa-let-7d precursor miRNA

Gene family

MIPF0000002; let-7

Literature search

2 open access papers mention csa-let-7d
(14 sentences)

Sequence

gaggcuauucacagaUGAGGUAGUUGGUUGUAUUGUUuuacaccuucggcgauaacuauacagccagcuaacuuuacugugguugcuaaauaucguccagca
..(((...((((((.((((((((((((((((((.(((.(.(.((...)).)).))).)))))))))))).))))))))))))..)))...............

Structure

-------------ga   uau      a      -            U   u a a  u 
               ggc   ucacag UGAGGU AGUUGGUUGUAU GUU u c cc  
               |||   |||||| |||||| |||||||||||| ||| | | || u
               ucg   gguguc auuuca ucgaccgacaua caa a g gg  
acgaccugcuauaaa   -uu      -      a            u   u - c  c 

Annotation confidence Not enough data

Genome context

reftig_44: 256943-257044 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from csa-let-7d

Mature csa-let-7d

• Accession: MIMAT0006119
• Description: Ciona savignyi csa-let-7d mature miRNA
• Sequence: 16 - UGAGGUAGUUGGUUGUAUUGUU - 37
• Evidence: not_experimental

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080