miRBase entry: csa-let-7b

Stem-loop csa-let-7b


Accession
MI0007182
Description
Ciona savignyi csa-let-7b precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
2 open access papers mention csa-let-7b
(14 sentences)

Sequence

uaguagucuuguuguUGAGGUAGUAGGUUAUGUUGUUgcgugaauuacaacacacaggagauacaacaugacuuacucaucucugcagaagggcuacagcua
..((((((((.((((.((((((((((((((((((((((.(((........))).))......))))))))))))))).))))).)))).)))))))).....

Structure
---ua        g    U     -               ------  c   aau 
     guagucuu uugu GAGGU AGUAGGUUAUGUUGU      Ug gug   u
     |||||||| |||| ||||| |||||||||||||||      || |||    
     caucggga gacg cucua ucauucaguacaaca      ac cac   a
aucga        a    u     c               uagagg  a   aac 


Annotation confidence Not enough data
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Genome context
reftig_41: 1115604-1115705 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from csa-let-7b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature csa-let-7b

Accession MIMAT0006117
Description Ciona savignyi csa-let-7b mature miRNA
Sequence 16 - UGAGGUAGUAGGUUAUGUUGUU - 37
Evidence not_experimental

References

  1. PubMed ID: 18339653
    Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
    "Fu X, Adamski M, Thompson EM"
    "Mol Biol Evol (2008) 25:1067-1080