miRBase entry: gga-mir-1456

Stem-loop gga-mir-1456


Accession
MI0007061
Description
Gallus gallus gga-mir-1456 precursor miRNA

Literature search
4 open access papers mention gga-mir-1456
(6 sentences)

Sequence

1378 reads, 26 reads per million, 5 experiments
gucagauggagccugggccgaacaggGAAAGGACGGAGGCGGCCCGCGCggggucguucaguCGGGGUCGUCGCCGUCCCUUCcccguucgacccguacccgccugagcu
.((((.(((.(..((((.(((((.(((((.((((((.((((((((..(((((....))).))..)))))))).)))))).))))).))))).))))..)))).))))...

Structure
--g    a   a cc    c     a     A      A        GC  -   g 
   ucag ugg g  uggg cgaac ggGAA GGACGG GGCGGCCC  GC ggg u
   |||| ||| |  |||| ||||| ||||| |||||| ||||||||  || |||  
   aguc gcc c  gccc gcuug ccCUU CCUGCC CUGCUGGG  ug cuu c
ucg    c   - au    a     c     C      G        GC  a   g 


Annotation confidence Not enough data
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Genome context
chrZ: 44897354-44897463 [-]

Database links

Mature gga-miR-1456-5p

Accession MIMAT0007333
Description Gallus gallus gga-miR-1456-5p mature miRNA
Sequence 27 - GAAAGGACGGAGGCGGCCCGCGC - 49
Evidence experimental
454 [1], Illumina [2]

Mature gga-miR-1456-3p

Accession MIMAT0007334
Description Gallus gallus gga-miR-1456-3p mature miRNA
Sequence 63 - CGGGGUCGUCGCCGUCCCUUC - 83
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 18469162
    A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
    "Genome Res (2008) 18:957-964

  2. PubMed ID: 18430245
    Deep sequencing of chicken microRNAs
    Burnside J, Ouyang M, Anderson A, Bernberg E, Lu C, Meyers BC, Green PJ, Markis M, Isaacs G, Huang E, Morgan RW
    BMC Genomics (2008) 9:185