miRBase entry: gga-mir-1452

Stem-loop gga-mir-1452


Accession
MI0007056
Description
Gallus gallus gga-mir-1452 precursor miRNA


Sequence

22 reads, 1 reads per million, 2 experiments
agggacugucUUGAGAUAAGACAGAGGAUAUUaagccugaaauaaaaauaauauccuucuuucuugucuuuuagucuc
.(((((((....(((((((((.(((((((((((...............)))))))).))).))))))))).)))))))

Structure
a       ucUU         C   -        agccug 
 gggacug    GAGAUAAGA AGA GGAUAUUa      a
 |||||||    ||||||||| ||| ||||||||      a
 cucugau    uucuguucu ucu ccuauaau      a
-       ---u         u   u        aaaaau 


Annotation confidence Not enough data
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Genome context
chrZ: 66442096-66442173 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-1452
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-1452

Accession MIMAT0007328
Description Gallus gallus gga-miR-1452 mature miRNA
Sequence 11 - UUGAGAUAAGACAGAGGAUAUU - 32
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 18469162
    A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
    "Genome Res (2008) 18:957-964

  2. PubMed ID: 18430245
    Deep sequencing of chicken microRNAs
    Burnside J, Ouyang M, Anderson A, Bernberg E, Lu C, Meyers BC, Green PJ, Markis M, Isaacs G, Huang E, Morgan RW
    BMC Genomics (2008) 9:185