Stem-loop sequence gga-mir-460b

Accession

MI0007055 (change log)

Description

Gallus gallus miR-460b stem-loop

Gene family

MIPF0000134; mir-460

Literature search

6 open access papers mention gga-mir-460b
(10 sentences)

Stem-loop

   cucagaucu       cgu     u       ca         ua u 
5'          ggcucua   ugucc cauugua  ugcugugug  u u
            |||||||   ||||| |||||||  |||||||||  | g
3'          ucgaggu   acagg guaacgu  gcgacacau  a c
   -------ac       aau     u       ac         gc c 

Deep sequencing

130974 reads, 1.24e+03 reads per million, 5 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr4: 2714081-2714170 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR460B
• RNAcentral:URS000075DB6E_9031
• miRBase Tracker:MI0007055

Mature sequence gga-miR-460b-5p

• Accession: MIMAT0007326
• Sequence: 22 - uccucauuguacaugcugugug - 43
• Deep sequencing: 124700 reads, 5 experiments
• Evidence: experimental; 454 [1], Illumina [2]
• Database links:
  • RNAcentral:URS0000095F74_9031
• Predicted targets:
  • TargetScanVert:gga-miR-460b-5p
  • miRDB:gga-miR-460b-5p

Mature sequence gga-miR-460b-3p

• Accession: MIMAT0007327
• Sequence: 57 - cacagcgcaugcaauguggacau - 79
• Deep sequencing: 6266 reads, 5 experiments
• Evidence: experimental; 454 [1], Illumina [2]
• Database links:
  • RNAcentral:URS000075B3D0_9031
• Predicted targets:
  • TargetScanVert:gga-miR-460b-3p
  • miRDB:gga-miR-460b-3p

References

1. PMID:18430245 "Deep sequencing of chicken microRNAs" Burnside J, Ouyang M, Anderson A, Bernberg E, Lu C, Meyers BC, Green PJ, Markis M, Isaacs G, Huang E, Morgan RW BMC Genomics. 9:185(2008).
2. PMID:18469162 "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach" Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML Genome Res. 18:957-964(2008).