miRBase entry: ptc-MIR1448

Stem-loop ptc-MIR1448


Accession
MI0007048
Description
Populus trichocarpa ptc-MIR1448 precursor miRNA
Gene family
MIPF0000403; MIR482

Literature search
3 open access papers mention ptc-MIR1448
(119 sentences)

Sequence

guuacggguaugggaggauuggacaguacugcuugguuuuaauuaaccaaagucuguuCUUUCCAACGCCUCCCAUACcgguaau
(((((.(((((((((((.(((((.((.((.((((((((......)))).))))..)).)).)))))..))))))))))).)))))

Structure
     g           -a     c  u  -u    -    uu 
guuac gguaugggagg  uugga ag ac  gcuu gguu  a
||||| |||||||||||  ||||| || ||  |||| ||||   
uaaug cCAUACCCUCC  AACCU UC ug  ugaa ccaa  a
     g           GC     U  u  uc    a    uu 


Annotation confidence Not enough data
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Genome context
CM000344.2: 8028236-8028320 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ptc-MIR1448
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptc-miR1448

Accession MIMAT0006010
Description Populus trichocarpa ptc-miR1448 mature miRNA
Sequence 59 - CUUUCCAACGCCUCCCAUAC - 78
Evidence experimental
cloned [1]

References

  1. PubMed ID: 18363789
    Stress-responsive microRNAs in Populus
    "Lu S, Sun YH, Chiang VL"
    "Plant J (2008) 55:131-151