miRBase entry: ptc-MIR1446e

Stem-loop ptc-MIR1446e


Accession
MI0007046
Description
Populus trichocarpa ptc-MIR1446e precursor miRNA
Gene family
MIPF0000459; MIR1446

Literature search
1 open access papers mention ptc-MIR1446e
(4 sentences)

Sequence

ccaacuuuUUCUGAACUCUCUCCCUCAAcugcuauucuagagcuuguuaauccuugucaaguguuucccuguagcagucgaggcgaggggguuucggaaaauguugg
(((((.((((((((((((((((((((.((((((((......(((((...........)))))........)))))))).)))).))))))).))))))))).)))))

Structure
     u         -       -    A        --ucuaga     uuaa 
ccaac uuUUCUGAA CUCUCUC CCUC Acugcuau        gcuug    u
||||| ||||||||| ||||||| |||| ||||||||        |||||    c
gguug aaaaggcuu gggggag ggag ugacgaug        ugaac    c
     u         u       c    c        ucccuuug     uguu 


Annotation confidence Not enough data
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Genome context
CM000351.2: 12482366-12482472 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ptc-MIR1446e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptc-miR1446e

Accession MIMAT0006008
Description Populus trichocarpa ptc-miR1446e mature miRNA
Sequence 9 - UUCUGAACUCUCUCCCUCAA - 28
Evidence experimental
cloned [1]

References

  1. PubMed ID: 18363789
    Stress-responsive microRNAs in Populus
    "Lu S, Sun YH, Chiang VL"
    "Plant J (2008) 55:131-151