Stem-loop sequence ptc-MIR1446b

Accession

MI0007043 (change log)

Description

Populus trichocarpa miR1446b stem-loop

Gene family

MIPF0000459; MIR1446

Literature search

1 open access papers mention ptc-MIR1446b
(4 sentences)

Stem-loop

        uuc          u   -    a     c  u u    ---      a 
5' ccaau   uucugaacuc cuc ccuc accgc ac c agag   guuggc c
   |||||   |||||||||| ||| |||| ||||| || | ||||   |||||| c
3' gguug   aagacuuggg gag ggag uggcg ug g ucuu   uaacug u
        uac          -   u    c     a  u -    ugu      u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Poptr2_0; GCA_000002775.2): CM000348.2: 11669781-11669883 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ptc-MIR1446b

• ptc-MIR477b: CM000348.2: 11674627-11674711 [-]
• ptc-MIR1446a: CM000348.2: 11674408-11674512 [-]
• ptc-MIR477a: CM000348.2: 11669997-11670081 [-]
• ptc-MIR1446b: CM000348.2: 11669781-11669883 [-]

Database links

• RNAcentral:URS00007B02C7_3694
• miRBase Tracker:MI0007043

Mature sequence ptc-miR1446b

• Accession: MIMAT0006005
• Sequence: 9 - uucugaacucucucccucaa - 28
• Evidence: experimental; cloned [1]

References

1. PMID:18363789 "Stress-responsive microRNAs in Populus" Lu S, Sun YH, Chiang VL Plant J. 55:131-151(2008).