miRBase entry: ptc-MIR1446b

Stem-loop ptc-MIR1446b


Accession
MI0007043
Description
Populus trichocarpa ptc-MIR1446b precursor miRNA
Gene family
MIPF0000459; MIR1446

Literature search
1 open access papers mention ptc-MIR1446b
(4 sentences)

Sequence

ccaauuucUUCUGAACUCUCUCCCUCAAccgccacucuagagguuggcaccuugucaauuguuucuguguagcggucgaggugagggguucagaacauguugg
(((((...((((((((((.(((((((.(((((.((..((((((((((((...)))))))...))))).)).))))).)))).)))))))))))))...)))))

Structure
     uuc          U   -    A     c  uc     ---       c 
ccaau   UUCUGAACUC CUC CCUC Accgc ac  uagag   guuggca  
|||||   |||||||||| ||| |||| ||||| ||  |||||   ||||||| c
gguug   aagacuuggg gag ggag uggcg ug  gucuu   uaacugu  
     uac          -   u    c     a  -u     ugu       u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
CM000348.2: 11669781-11669883 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from ptc-MIR1446b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptc-miR1446b

Accession MIMAT0006005
Description Populus trichocarpa ptc-miR1446b mature miRNA
Sequence 9 - UUCUGAACUCUCUCCCUCAA - 28
Evidence experimental
cloned [1]

References

  1. PubMed ID: 18363789
    Stress-responsive microRNAs in Populus
    "Lu S, Sun YH, Chiang VL"
    "Plant J (2008) 55:131-151