miRBase entry: ptc-MIR1444b

Stem-loop ptc-MIR1444b


Accession
MI0007038
Description
Populus trichocarpa ptc-MIR1444b precursor miRNA
Gene family
MIPF0000461; MIR1444

Literature search
3 open access papers mention ptc-MIR1444b
(124 sentences)

Sequence

uuuaucccucgaauauugaucgaauauguaugaaauaugaugguuaaauguuucaUUCACAUUCGGUCAACGUUCgagugauaaa
.(((((.(((((((.((((((((((.((.(((((((((.........))))))))).)).)))))))))).))))))).))))).

Structure
u     c       a          a  u         gau 
 uuauc cucgaau uugaucgaau ug augaaauau   g
 ||||| ||||||| |||||||||| || |||||||||   g
 aauag gagCUUG AACUGGCUUA AC Uacuuugua   u
a     u       C          C  U         aau 


Annotation confidence Not enough data
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Genome context
CM000346.2: 11417599-11417683 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ptc-MIR1444b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptc-miR1444b

Accession MIMAT0006000
Description Populus trichocarpa ptc-miR1444b mature miRNA
Sequence 56 - UUCACAUUCGGUCAACGUUC - 75
Evidence experimental
cloned [1]

References

  1. PubMed ID: 18363789
    Stress-responsive microRNAs in Populus
    "Lu S, Sun YH, Chiang VL"
    "Plant J (2008) 55:131-151