Stem-loop ptc-MIR530b

Accession

MI0007036

Description

Populus trichocarpa ptc-MIR530b precursor miRNA

Gene family

MIPF0000521; MIR530

Sequence

gccaauauguugccuuuaucUGCAUUUGCACCUGCAUCUUuugcguuuguuuuguuuuugacuccacaaacaaaaucaaguucugucgauacaguaugugggacaauuagauauggaaacuaauaagcuuaguugaggugcaggugcaagugcaggugaaugccauuuuggu
(((((.(((..((.((((((((((((((((((((((((((.....((((((((((((.((....)).)))))))).))))...((((..((((...)))).))))............((((((.....)))))))))))))))))))))))))))))))).))))).)))))

Structure

     u   uu  c                          -------------------------------------------------uugcg    -        u  a 
gccaa aug  gc uuuaucUGCAUUUGCACCUGCAUCUU                                                      uuug uuuuguuu ug c
||||| |||  || ||||||||||||||||||||||||||                                                      |||| |||||||| ||  
ugguu uac  cg aaguggacgugaacguggacguggag                                                      gaac aaaacaaa ac u
     u   --  u                          uugauucgaauaaucaaagguauagauuaacaggguguaugacauagcugucuu    u        c  c 

Annotation confidence Not enough data

Genome context

CM000340.2: 21356028-21356199 [+]

Mature ptc-miR530b

• Accession: MIMAT0005998
• Description: Populus trichocarpa ptc-miR530b mature miRNA
• Sequence: 21 - UGCAUUUGCACCUGCAUCUU - 40
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 18363789
   Stress-responsive microRNAs in Populus
   "Lu S, Sun YH, Chiang VL"
   "Plant J (2008) 55:131-151