Stem-loop ptc-MIR171j

Accession

MI0007034

Description

Populus trichocarpa ptc-MIR171j precursor miRNA

Gene family

MIPF0000104; MIR171_2

Literature search

6 open access papers mention ptc-MIR171j
(11 sentences)

Sequence

gaagcagacauggcgugguauugauccggcucuucuucuguauuugcaucagaaguuuuucgcugaagaCGAGCCGAAUCAAUAUCACUcuuguacgcuuc
(((((..(((.((.(((((((((((.((((((.(((((.((....((.......)).....)).))))).)))))).))))))))))))).)))..)))))

Structure

     ag   u  c           c      u     u  -auuu  au 
gaagc  aca gg gugguauugau cggcuc ucuuc gu     gc  c
|||||  ||| || ||||||||||| |||||| ||||| ||     ||  a
cuucg  ugu cU CACUAUAACUA GCCGAG agaag cg     ug  g
     ca   u  -           A      C     u  cuuuu  aa 

Annotation confidence Not enough data

Genome context

Unknown

Mature ptc-miR171j

• Accession: MIMAT0005996
• Description: Populus trichocarpa ptc-miR171j mature miRNA
• Sequence: 70 - CGAGCCGAAUCAAUAUCACU - 89
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 18363789
   Stress-responsive microRNAs in Populus
   "Lu S, Sun YH, Chiang VL"
   "Plant J (2008) 55:131-151