Stem-loop ptc-MIR171m

Accession

MI0007033

Description

Populus trichocarpa ptc-MIR171m precursor miRNA

Gene family

MIPF0000104; MIR171_2

Literature search

6 open access papers mention ptc-MIR171m
(11 sentences)

Sequence

gaagcagacauggcgugguauugauccggcucaucuucuguauuugcaucagaaguucuucgcugaagaCGAGCCGAAUCAAUAUCACUcuuguacgcuuc
(((((..(((.((.(((((((((((.((((((..((((((.........)))))).(((((...))))).)))))).))))))))))))).)))..)))))

Structure

     ag   u  c           c      -------------au      uau 
gaagc  aca gg gugguauugau cggcuc               cuucug   u
|||||  ||| || ||||||||||| ||||||               ||||||   u
cuucg  ugu cU CACUAUAACUA GCCGAG               gaagac   g
     ca   u  -           A      Cagaagucgcuucuu      uac 

Annotation confidence Not enough data

Genome context

CM000348.2: 2197358-2197458 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR171m

Mature ptc-miR171m

• Accession: MIMAT0005995
• Description: Populus trichocarpa ptc-miR171m mature miRNA
• Sequence: 70 - CGAGCCGAAUCAAUAUCACU - 89
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 18363789
   Stress-responsive microRNAs in Populus
   "Lu S, Sun YH, Chiang VL"
   "Plant J (2008) 55:131-151