miRBase entry: oan-mir-1419f

Stem-loop oan-mir-1419f


Accession
MI0007019
Description
Ornithorhynchus anatinus oan-mir-1419f precursor miRNA
Gene family
MIPF0000570; mir-1419


Sequence

10 reads, 9 reads per million, 2 experiments
auauccgagcacagcgauggugccgcacAGUGCUCGGAGAUAUUGUCACGugcuaccccauucugAUAUGAUAUCACCCAGCACCACgcguguccauugagagcugc
.......(((....((((((.(((((...(((((.((.((((((((((.(((......)))..))))..)))))).)).)))))...))).))))))))...)))..

Structure
auauccg   acag      u  -   acA     C  A      --    -C   cu 
       agc    cgaugg gc cgc   GUGCU GG GAUAUU  GUCA  Gug  a
       |||    |||||| || |||   ||||| || ||||||  ||||  |||   
       ucg    guuacc ug gcg   CACGA CC CUAUAG  UAgu  uac  c
-----cg   -aga      -  u   CAC     C  A      UA    cu   cc 


Annotation confidence Not enough data
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Genome context
Contig22847: 2420-2526 [-]
Clustered miRNAs
11 other miRNAs are < 10 kb from oan-mir-1419f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1419f-5p

Accession MIMAT0007320
Description Ornithorhynchus anatinus oan-miR-1419f-5p mature miRNA
Sequence 29 - AGUGCUCGGAGAUAUUGUCACG - 50
Evidence experimental
Illumina [1]

Mature oan-miR-1419f-3p

Accession MIMAT0007321
Description Ornithorhynchus anatinus oan-miR-1419f-3p mature miRNA
Sequence 66 - AUAUGAUAUCACCCAGCACCAC - 87
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004