miRBase entry: oan-mir-1422q

Stem-loop oan-mir-1422q


Accession
MI0007017
Description
Ornithorhynchus anatinus oan-mir-1422q precursor miRNA
Gene family
MIPF0000565; mir-1422


Sequence

434 reads, 683 reads per million, 3 experiments
aggauugaccauugugauucugguUUCAAUCCAGACCAGUUUUUCUuuauguuaaauaaccuaGAAAACUGUAUCUGGAUUGAUGcuauagucagaauauuuagucaga
..((((((..(((.(((((.((((.((((((((((.((((((((..((((.....))))....))))))))..)))))))))).)))).))))).)))..))))))...

Structure
-ag      cc   g     c    U          -C        --CU    g 
   gauuga  auu ugauu uggu UCAAUCCAGA  CAGUUUUU    uuau u
   ||||||  ||| ||||| |||| ||||||||||  ||||||||    |||| u
   cugauu  uaa acuga aucG AGUUAGGUCU  GUCAAAAG    aaua a
aga      ua   g     u    U          AU        aucc    a 


Annotation confidence Not enough data
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Genome context
Contig11344: 3225-3333 [-]
Clustered miRNAs
8 other miRNAs are < 10 kb from oan-mir-1422q
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1422q-5p

Accession MIMAT0007316
Description Ornithorhynchus anatinus oan-miR-1422q-5p mature miRNA
Sequence 25 - UUCAAUCCAGACCAGUUUUUCU - 46
Evidence experimental
Illumina [1]

Mature oan-miR-1422q-3p

Accession MIMAT0007317
Description Ornithorhynchus anatinus oan-miR-1422q-3p mature miRNA
Sequence 64 - GAAAACUGUAUCUGGAUUGAUG - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004