miRBase entry: oan-mir-1421al

Stem-loop oan-mir-1421al


Accession
MI0007014
Description
Ornithorhynchus anatinus oan-mir-1421al precursor miRNA
Gene family
MIPF0000564; mir-1421


Sequence

1033 reads, 772 reads per million, 4 experiments
aggaucccagcugaccuauggcacggugugaaCAGGUUACAUGUGGUACAGCAUgauaguggaauaUGCUGCAUCACGUGUAACCUCcccacacugcacugugucucucuguc
.......(((..((..(((((..(((((((...((((((((((((((.(((((((.........))))))).))))))))))))))...)))))))..)))))..)).)))..

Structure
aggaucc   cu  cc     ca       aaC              A       aua 
       cag  ga  uaugg  cggugug   AGGUUACAUGUGGU CAGCAUg   g
       |||  ||  |||||  |||||||   |||||||||||||| |||||||   u
       guc  cu  guguc  gucacac   UCCAAUGUGCACUA GUCGUau   g
-----cu   -u  cu     ac       ccC              C       aag 


Annotation confidence Not enough data
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Genome context
Contig7160: 22579-22691 [-]
Clustered miRNAs
10 other miRNAs are < 10 kb from oan-mir-1421al
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1421al-5p

Accession MIMAT0007311
Description Ornithorhynchus anatinus oan-miR-1421al-5p mature miRNA
Sequence 33 - CAGGUUACAUGUGGUACAGCAU - 54
Evidence experimental
Illumina [1]

Mature oan-miR-1421al-3p

Accession MIMAT0007312
Description Ornithorhynchus anatinus oan-miR-1421al-3p mature miRNA
Sequence 67 - UGCUGCAUCACGUGUAACCUC - 87
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004