miRBase entry: oan-mir-1421ak

Stem-loop oan-mir-1421ak


Accession
MI0007013
Description
Ornithorhynchus anatinus oan-mir-1421ak precursor miRNA
Gene family
MIPF0000564; mir-1421


Sequence

65 reads, 97 reads per million, 2 experiments
gcgcacggugugagCUGGUCACAUGAGGUGCAGUGUgauaguggaagacACUGCAUACCAUGUGAUCUCGCUacacggugca
..((((.((((.(((.(((((((((..(((((((((...........)))))))))..)))))))))..))))))).)))).

Structure
gc    g    g   -U         AG         gaua 
  gcac gugu agC  GGUCACAUG  GUGCAGUGU    g
  |||| |||| |||  |||||||||  |||||||||    u
  cgug caca UCG  CUAGUGUAC  UACGUCAca    g
-a    g    -   CU         CA         gaag 


Annotation confidence High
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Genome context
Contig7160: 15306-15387 [-]
Clustered miRNAs
18 other miRNAs are < 10 kb from oan-mir-1421ak
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1421ak-5p

Accession MIMAT0007309
Description Ornithorhynchus anatinus oan-miR-1421ak-5p mature miRNA
Sequence 15 - CUGGUCACAUGAGGUGCAGUGU - 36
Evidence experimental
Illumina [1]

Mature oan-miR-1421ak-3p

Accession MIMAT0007310
Description Ornithorhynchus anatinus oan-miR-1421ak-3p mature miRNA
Sequence 50 - ACUGCAUACCAUGUGAUCUCGCU - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004