miRBase entry: oan-mir-1421l-2

Stem-loop oan-mir-1421l-2


Accession
MI0007011
Description
Ornithorhynchus anatinus oan-mir-1421l-2 precursor miRNA
Gene family
MIPF0000564; mir-1421


Sequence

2609 reads, 1263 reads per million, 5 experiments
uacugcacggugugAAGUGGUCACUUGAGUUGCAGUgggguaguggaacaugcUGCAUCCCAUGUGACUGCUCUacacagugccgug
(((.((((.(((((.(((((((((.((.(.(((((((..((......)).))))))).).)).))))))))).))))).)))).)))

Structure
   u    g     A         U  A U       gg  ag 
uac gcac gugug AGUGGUCAC UG G UGCAGUg  gu  u
||| |||| ||||| ||||||||| || | |||||||  ||   
gug cgug cacaU UCGUCAGUG AC C ACGUcgu  ca  g
   c    a     C         U  C U       -a  ag 


Annotation confidence Not enough data
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Genome context
Contig7160: 8702-8788 [-]
Clustered miRNAs
19 other miRNAs are < 10 kb from oan-mir-1421l-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1421l-5p

Accession MIMAT0007068
Description Ornithorhynchus anatinus oan-miR-1421l-5p mature miRNA
Sequence 15 - AAGUGGUCACUUGAGUUGCAGU - 36
Evidence experimental
Illumina [1]

Mature oan-miR-1421l-2-3p

Accession MIMAT0009181
Description Ornithorhynchus anatinus oan-miR-1421l-2-3p mature miRNA
Sequence 54 - UGCAUCCCAUGUGACUGCUCU - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004