Stem-loop oan-mir-1421aj

Accession

MI0007003

Description

Ornithorhynchus anatinus oan-mir-1421aj precursor miRNA

Gene family

MIPF0000564; mir-1421

Sequence

239 reads, 251 reads per million, 3 experiments

uugugugauuccagcugaccuacggcacggugugAGGAGGACAUAUGUGGUGUGGUuugauaguagaauaugcUGCAUCAUGCGUGACCUCCCCacgccguguuguaucuuuccaucuggacguucaucag
.((.((((.(((((.((...((((((((((((((.(((((.(((.(((((((((((...............))))))))))).))).))))).))))))))))))))......)).)))))...)))))).

Structure

u  u    --u     c  ---acc              A     A   A           uugaua 
 ug guga   uccag ug      uacggcacggugug GGAGG CAU UGUGGUGUGGU      g
 || ||||   ||||| ||      |||||||||||||| ||||| ||| |||||||||||      u
 ac uacu   agguc ac      auguugugccgcaC CCUCC GUG GUACUACGUcg      a
g  -    ugc     u  cuuucu              C     A   C           uauaag 

Annotation confidence Not enough data

Genome context

X1: 44314342-44314472 [-]

Clustered miRNAs

9 other miRNAs are < 10 kb from oan-mir-1421aj

Mature oan-miR-1421aj-5p

• Accession: MIMAT0007307
• Description: Ornithorhynchus anatinus oan-miR-1421aj-5p mature miRNA
• Sequence: 35 - AGGAGGACAUAUGUGGUGUGGU - 56
• Evidence: experimental ; Illumina [1]

Mature oan-miR-1421aj-3p

• Accession: MIMAT0007308
• Description: Ornithorhynchus anatinus oan-miR-1421aj-3p mature miRNA
• Sequence: 74 - UGCAUCAUGCGUGACCUCCCC - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004