miRBase entry: oan-mir-1421ac-2

Stem-loop oan-mir-1421ac-2


Accession
MI0007000
Description
Ornithorhynchus anatinus oan-mir-1421ac-2 precursor miRNA
Gene family
MIPF0000564; mir-1421


Sequence

1410 reads, 2015 reads per million, 4 experiments
cacggcacugugugAGGAGGACACAUGUGGUGCAGUaugauacuagcauaugcUGCAUCAUGCGUGACCUCCCCacaccguguugug
((((((((.(((((.(((((.(((.((((((((((((((.........)))))))))))))).))).))))).))))).))))))))

Structure
        u     A     A   A              aua 
cacggcac gugug GGAGG CAC UGUGGUGCAGUaug   c
|||||||| ||||| ||||| ||| ||||||||||||||   u
guguugug cacaC CCUCC GUG GUACUACGUcguau   a
        c     C     A   C              acg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
X1: 44308437-44308523 [-]
Clustered miRNAs
11 other miRNAs are < 10 kb from oan-mir-1421ac-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1421ac-5p

Accession MIMAT0007257
Description Ornithorhynchus anatinus oan-miR-1421ac-5p mature miRNA
Sequence 15 - AGGAGGACACAUGUGGUGCAGU - 36
Evidence experimental
Illumina [1]

Mature oan-miR-1421ac-2-3p

Accession MIMAT0007302
Description Ornithorhynchus anatinus oan-miR-1421ac-2-3p mature miRNA
Sequence 54 - UGCAUCAUGCGUGACCUCCCC - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004