miRBase entry: oan-mir-1419b-2

Stem-loop oan-mir-1419b-2


Accession
MI0006998
Description
Ornithorhynchus anatinus oan-mir-1419b-2 precursor miRNA
Gene family
MIPF0000570; mir-1419


Sequence

3574 reads, 1655 reads per million, 5 experiments
cauccugggcacagugaggugucauacacAGUGCUGGGAGAUGUUAUCACGugauauuucauucggUGAUAUCGUCACCCAGCACUGCaaaugcccaucaagagcugcgggaaag
..((((((((....(((((.(.(((...((((((((((.((((.((((((((((....))))...)))))).)))).))))))))))...)))))).)))...))).)))))...

Structure
-ca     -   acag   -  u u   aca          A    U      ---    u 
   uccug ggc    uga gg g cau   cAGUGCUGGG GAUG UAUCAC   Guga a
   ||||| |||    ||| || | |||   |||||||||| |||| ||||||   ||||  
   agggc ucg    acu cc c gua   GUCACGACCC CUGC AUAGUg   uacu u
gaa     g   -aga   a  - -   aaC          A    U      gcu    u 


Annotation confidence High
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Genome context
X1: 44286185-44286299 [-]
Clustered miRNAs
11 other miRNAs are < 10 kb from oan-mir-1419b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1419b-5p

Accession MIMAT0007240
Description Ornithorhynchus anatinus oan-miR-1419b-5p mature miRNA
Sequence 30 - AGUGCUGGGAGAUGUUAUCACG - 51
Evidence experimental
Illumina [1]

Mature oan-miR-1419b-2-3p

Accession MIMAT0009174
Description Ornithorhynchus anatinus oan-miR-1419b-2-3p mature miRNA
Sequence 67 - UGAUAUCGUCACCCAGCACUGC - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004