miRBase entry: oan-mir-1421ag-1

Stem-loop oan-mir-1421ag-1


Accession
MI0006997
Description
Ornithorhynchus anatinus oan-mir-1421ag-1 precursor miRNA
Gene family
MIPF0000564; mir-1421


Sequence

5 reads, 9 reads per million, 1 experiments
uacggcacaguuugAGGUGGACACGUGGUGCAGUAugauaguggaauaaGCUGCAUCACGUGUGACCUCCauacaccgugcugua
((((((((.((..(((((..((((((((((((((...............)))))))))))))).))))).....)).))))))))

Structure
        a  ---uu     GG              Augaua 
uacggcac gu     gAGGU  ACACGUGGUGCAGU      g
|||||||| ||     |||||  ||||||||||||||      u
augucgug ca     CUCCA  UGUGCACUACGUCG      g
        c  cauaC     -G              aauaag 


Annotation confidence Not enough data
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Genome context
X1: 44295490-44295574 [-]
Clustered miRNAs
13 other miRNAs are < 10 kb from oan-mir-1421ag-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1421ag-5p

Accession MIMAT0007297
Description Ornithorhynchus anatinus oan-miR-1421ag-5p mature miRNA
Sequence 15 - AGGUGGACACGUGGUGCAGUA - 35
Evidence experimental
Illumina [1]

Mature oan-miR-1421ag-3p

Accession MIMAT0007298
Description Ornithorhynchus anatinus oan-miR-1421ag-3p mature miRNA
Sequence 50 - GCUGCAUCACGUGUGACCUCC - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004