miRBase entry: oan-mir-1419c-2

Stem-loop oan-mir-1419c-2


Accession
MI0006995
Description
Ornithorhynchus anatinus oan-mir-1419c-2 precursor miRNA
Gene family
MIPF0000570; mir-1419


Sequence

4910 reads, 2027 reads per million, 5 experiments
uccugggcccagugauggcgucaugcacAGUUCUGGGAGAUGUUAUCACGugcuaucucauucggUGAUAUCGUCACCCAGCACCGCacaugcccaucaagagccgcggga
((((((((....((((((.(.((((..(.((.(((((.((((.((((((...............)))))).)))).))))).)).)..)))))))))))...))).)))))

Structure
     -   ccag      c u    ca A  U     A    U      Gugcua 
uccug ggc    ugaugg g caug  c GU CUGGG GAUG UAUCAC      u
||||| |||    |||||| | ||||  | || ||||| |||| ||||||      c
agggc ccg    acuacc c guac  G CA GACCC CUGC AUAGUg      u
     g   -aga      - -    aC C  C     A    U      gcuuac 


Annotation confidence High
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Genome context
X1: 44296776-44296886 [-]
Clustered miRNAs
13 other miRNAs are < 10 kb from oan-mir-1419c-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1419c-5p

Accession MIMAT0007247
Description Ornithorhynchus anatinus oan-miR-1419c-5p mature miRNA
Sequence 29 - AGUUCUGGGAGAUGUUAUCACG - 50
Evidence experimental
Illumina [1]

Mature oan-miR-1419c-3p

Accession MIMAT0007248
Description Ornithorhynchus anatinus oan-miR-1419c-3p mature miRNA
Sequence 66 - UGAUAUCGUCACCCAGCACCGC - 87
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004