miRBase entry: gga-mir-551

Stem-loop gga-mir-551


Accession
MI0006983
Description
Gallus gallus gga-mir-551 precursor miRNA
Gene family
MIPF0000360; mir-551

Literature search
1 open access papers mention gga-mir-551
(1 sentences)

Sequence

116 reads, 2 reads per million, 4 experiments
ccaccagagcugccccauggcuccaGAAAUCAAGGGUGGGUAAGACCUuguaggauaacuggcagGCGACCCAUACUUGGUUUCAGgggcuguguggguaucgucaguggugg
(((((((((.((((((((((((((.(((((((((.((((((..(.(((..(((.....)))..)))).)))))).))))))))).))))))))).))))).).))..))))))

Structure
      --  - c     -         a         G      AA A   ug   g 
ccacca  ga g ugccc cauggcucc GAAAUCAAG GUGGGU  G CCU  uag a
||||||  || | ||||| ||||||||| ||||||||| ||||||  | |||  ||| u
gguggu  cu c auggg gugucgggG CUUUGGUUC UACCCA  C Gga  guc a
      ga  g u     u         A         A      -G -   cg   a 


Annotation confidence High
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Genome context
chr9: 20500004-20500116 [-]

Database links

Mature gga-miR-551-5p

Accession MIMAT0007289
Description Gallus gallus gga-miR-551-5p mature miRNA
Sequence 26 - GAAAUCAAGGGUGGGUAAGACCU - 48
Evidence experimental
cloned [1]

Mature gga-miR-551-3p

Accession MIMAT0007290
Description Gallus gallus gga-miR-551-3p mature miRNA
Sequence 66 - GCGACCCAUACUUGGUUUCAG - 86
Evidence experimental
cloned [1-2], Illumina [3]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004

  2. PubMed ID: 18511220
    Identification of novel chicken microRNAs and analysis of their genomic organization
    "Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH"
    "Gene (2008) 418:34-40

  3. PubMed ID: 18469162
    A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
    "Genome Res (2008) 18:957-964