Stem-loop gga-mir-1397

Accession

MI0006980

Description

Gallus gallus gga-mir-1397 precursor miRNA

Gene family

MIPF0000642; mir-1397

Sequence

217 reads, 6 reads per million, 3 experiments

agcuguugacugaaugcgaugugugcauUGCAUUGCGACGGGUUAUAUCAcuaaucguaacauGAUGUAACCCAACGCAGCAUGAuguaagcgucgugaaacguu
...............(((((((.((((((...(((((..(((((((((((............)))))))))))..)))))...)))))).)))))))........

Structure

agcuguugacugaau       g      GCA     AC           cuaau 
               gcgaugu ugcauU   UUGCG  GGGUUAUAUCA     c
               ||||||| ||||||   |||||  |||||||||||      
               ugcugcg auguAG   GACGC  CCCAAUGUAGu     g
-------uugcaaag       a      UAC     AA           acaau 

Annotation confidence High

Genome context

chr1: 126961688-126961792 [+]

Mature gga-miR-1397-5p

• Accession: MIMAT0007283
• Description: Gallus gallus gga-miR-1397-5p mature miRNA
• Sequence: 29 - UGCAUUGCGACGGGUUAUAUCA - 50
• Evidence: experimental ; cloned [1]

Mature gga-miR-1397-3p

• Accession: MIMAT0007284
• Description: Gallus gallus gga-miR-1397-3p mature miRNA
• Sequence: 64 - GAUGUAACCCAACGCAGCAUGA - 85
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004


2. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964