miRBase entry: osa-MIR1426

Stem-loop osa-MIR1426


Accession
MI0006966
Description
Oryza sativa osa-MIR1426 precursor miRNA

Literature search
1 open access papers mention osa-MIR1426
(1 sentences)

Sequence

15 reads, 14 reads per million, 2 experiments
aaauAGAAUCUUGAUGAUGAUUAAAaggagggacgauaggcaggccgugaagcaaauauguaagacgguugccgggaauucuagaaagugaaaaaaaaaccccauugauaaucauauucgauuuucaaaa
.....(((..((((..(((((((..((..(((......(((((.((((...(((....)))...))))))))).....(((........))).......)))..))..)))))))..))))..)))....

Structure
aaauA   UC    UG       AA  ga   --------------------acgaua     g    gaa   a 
     GAA  UUGA  AUGAUUA  ag  ggg                          ggcag ccgu   gca a
     |||  ||||  |||||||  ||  |||                          ||||| ||||   |||  
     cuu  agcu  uacuaau  uu  ccc                          ccguu ggca   ugu u
-aaaa   uu    ua       ag  ac   aaaaaaaaagugaaagaucuuaaggg     -    gaa   a 


Annotation confidence Not enough data
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Genome context
Chr1: 7189218-7189347 [-]

Database links

Mature osa-miR1426

Accession MIMAT0005960
Description Oryza sativa osa-miR1426 mature miRNA
Sequence 5 - AGAAUCUUGAUGAUGAUUAAA - 25
Evidence experimental
MPSS [1], Northern [1]

References

  1. PubMed ID: 18353984
    Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)
    "Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ"
    "Proc Natl Acad Sci U S A (2008) 105:4951-4956