Stem-loop oan-mir-1421af

Accession

MI0006950

Description

Ornithorhynchus anatinus oan-mir-1421af precursor miRNA

Gene family

MIPF0000564; mir-1421

Sequence

323 reads, 223 reads per million, 4 experiments

gaccuacggcauggugugAACAGGUUAUAUGCGGUGCAGUgugauauuggaauaugcUGCAUCACGUGUAACCUUCCUauaccgugcugugucuc
(((..(((((((((((((...((((((((((.(((((((((((.........))))))))))).))))))))))...))))))))))))))))..

Structure

--   cu             AAC          C           aua 
  gac  acggcauggugug   AGGUUAUAUG GGUGCAGUgug   u
  |||  |||||||||||||   |||||||||| |||||||||||   u
  cug  ugucgugccauaU   UCCAAUGUGC CUACGUcguau   g
cu   --             CCU          A           aag 

Annotation confidence Not enough data

Genome context

X1: 44318896-44318990 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from oan-mir-1421af

Mature oan-miR-1421af-5p

• Accession: MIMAT0007264
• Description: Ornithorhynchus anatinus oan-miR-1421af-5p mature miRNA
• Sequence: 19 - AACAGGUUAUAUGCGGUGCAGU - 40
• Evidence: experimental ; Illumina [1]

Mature oan-miR-1421af-3p

• Accession: MIMAT0007265
• Description: Ornithorhynchus anatinus oan-miR-1421af-3p mature miRNA
• Sequence: 58 - UGCAUCACGUGUAACCUUCCU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004