miRBase entry: oan-mir-1419e

Stem-loop oan-mir-1419e


Accession
MI0006949
Description
Ornithorhynchus anatinus oan-mir-1419e precursor miRNA
Gene family
MIPF0000570; mir-1419


Sequence

4 reads, 7 reads per million, 1 experiments
gggcagauugauggugucacacacaAUGCUGGGAGACGUCAUCACGugcuaccuccggUGAUGUCAGCACCCAGCACCAugaugucc
(((((.....(((((............((((((.(((((((((.............)))))))))....)))))))))))..)))))

Structure
     gauug     gucacacacaAU      ---A         ACGug 
gggca     auggu            GCUGGG    GACGUCAUC     c
|||||     |||||            ||||||    |||||||||     u
ccugu     uACCA            CGACCC    CUGUAGUgg     a
     ---ag     ------------      ACGA         ccucc 


Annotation confidence Not enough data
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Genome context
X1: 44317624-44317710 [-]
Clustered miRNAs
7 other miRNAs are < 10 kb from oan-mir-1419e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1419e-5p

Accession MIMAT0007262
Description Ornithorhynchus anatinus oan-miR-1419e-5p mature miRNA
Sequence 26 - AUGCUGGGAGACGUCAUCACG - 46
Evidence experimental
Illumina [1]

Mature oan-miR-1419e-3p

Accession MIMAT0007263
Description Ornithorhynchus anatinus oan-miR-1419e-3p mature miRNA
Sequence 59 - UGAUGUCAGCACCCAGCACCA - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004