miRBase entry: oan-mir-1421ae

Stem-loop oan-mir-1421ae


Accession
MI0006948
Description
Ornithorhynchus anatinus oan-mir-1421ae precursor miRNA
Gene family
MIPF0000564; mir-1421


Sequence

113 reads, 117 reads per million, 3 experiments
aguugaccuacgguauggugugAACAGGUUAUAUAUGGUGCAGUgugauaguggaauauacugcaucacauguaaccucccuacaccgugcugugucucuccu
....(((..(((((((((((((...(((((((((.((((((((((((.........)))))))))))).)))))))))...))))))))))))))))......

Structure
--aguu   cu             AAC         A            aua 
      gac  acgguauggugug   AGGUUAUAU UGGUGCAGUgug   g
      |||  |||||||||||||   ||||||||| ||||||||||||   u
      cug  ugucgugccacau   uccaaugua acuacgucauau   g
uccucu   --             ccc         c            aag 


Annotation confidence Not enough data
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Genome context
X1: 44316162-44316264 [-]
Clustered miRNAs
8 other miRNAs are < 10 kb from oan-mir-1421ae
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1421ae

Accession MIMAT0007261
Description Ornithorhynchus anatinus oan-miR-1421ae mature miRNA
Sequence 23 - AACAGGUUAUAUAUGGUGCAGU - 44
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004