miRBase entry: oan-mir-1414

Stem-loop oan-mir-1414


Accession
MI0006945
Description
Ornithorhynchus anatinus oan-mir-1414 precursor miRNA


Sequence

3 reads, 5 reads per million, 1 experiments
cgcggccccaugugaUGGGGUCACAGGGUGGUUGGCaguccagugagaugugcCAUCUGCAGUGUGACCACAUGAcacagcgccgug
((((((.(..(((.(((.(((((((..((((.((((((((......))).))))).))))..))))))).))).)))..).))))))

Structure
      c ca   g   G       GG    U     -   ca 
cgcggc c  ugu aUG GGUCACA  GUGG UGGCa guc  g
|||||| |  ||| ||| |||||||  |||| ||||| |||   
gugccg g  acA UAC CCAGUGU  CGUC ACcgu uag  u
      c ac   G   A       GA    U     g   ag 


Annotation confidence Not enough data
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Genome context
X1: 44306726-44306812 [-]
Clustered miRNAs
12 other miRNAs are < 10 kb from oan-mir-1414
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1414-5p

Accession MIMAT0007255
Description Ornithorhynchus anatinus oan-miR-1414-5p mature miRNA
Sequence 16 - UGGGGUCACAGGGUGGUUGGC - 36
Evidence experimental
Illumina [1]

Mature oan-miR-1414-3p

Accession MIMAT0007256
Description Ornithorhynchus anatinus oan-miR-1414-3p mature miRNA
Sequence 54 - CAUCUGCAGUGUGACCACAUGA - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004