miRBase entry: oan-mir-1421ab-1

Stem-loop oan-mir-1421ab-1


Accession
MI0006943
Description
Ornithorhynchus anatinus oan-mir-1421ab-1 precursor miRNA
Gene family
MIPF0000564; mir-1421


Sequence

6723 reads, 2597 reads per million, 5 experiments
gugAGGAGCUCACACGUCUUGCAGAgugaugucauaaaaugaUGCAAUGCGUCUGAGCUCCUUac
((((((((((((.((((.(((((..((...........))..))))).)))).))))))))))))

Structure
            C    C     GA  gaug 
gugAGGAGCUCA ACGU UUGCA  gu    u
|||||||||||| |||| |||||  ||    c
caUUCCUCGAGU UGCG AACGU  ua    a
            C    U     ag  aaau 


Annotation confidence High
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Genome context
X1: 44298540-44298604 [-]
Clustered miRNAs
14 other miRNAs are < 10 kb from oan-mir-1421ab-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1421ab-5p

Accession MIMAT0007251
Description Ornithorhynchus anatinus oan-miR-1421ab-5p mature miRNA
Sequence 4 - AGGAGCUCACACGUCUUGCAGA - 25
Evidence experimental
Illumina [1]

Mature oan-miR-1421ab-3p

Accession MIMAT0007252
Description Ornithorhynchus anatinus oan-miR-1421ab-3p mature miRNA
Sequence 43 - UGCAAUGCGUCUGAGCUCCUU - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004