miRBase entry: oan-mir-1421x

Stem-loop oan-mir-1421x


Accession
MI0006938
Description
Ornithorhynchus anatinus oan-mir-1421x precursor miRNA
Gene family
MIPF0000564; mir-1421


Sequence

173 reads, 167 reads per million, 3 experiments
ggcacagugugagUAGGUCACGUGUGGUGCAGCAUgauaauggaauaugcUGCAUCGUGUGUGACCUCCCUAcacugcacuguguc
((((((((((.(((((((((((((((((((((((((.........))))))))))))))))))))))......)))))))))))))

Structure
          g   ------                      aua 
ggcacagugu agU      AGGUCACGUGUGGUGCAGCAUg   a
|||||||||| |||      ||||||||||||||||||||||   u
cugugucacg uca      UCCAGUGUGUGCUACGUcguau   g
          -   cAUCCC                      aag 


Annotation confidence Not enough data
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Genome context
X1: 44284340-44284425 [-]
Clustered miRNAs
9 other miRNAs are < 10 kb from oan-mir-1421x
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1421x-5p

Accession MIMAT0007242
Description Ornithorhynchus anatinus oan-miR-1421x-5p mature miRNA
Sequence 14 - UAGGUCACGUGUGGUGCAGCAU - 35
Evidence experimental
Illumina [1]

Mature oan-miR-1421x-3p

Accession MIMAT0007243
Description Ornithorhynchus anatinus oan-miR-1421x-3p mature miRNA
Sequence 51 - UGCAUCGUGUGUGACCUCCCUA - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004