miRBase entry: oan-let-7d

Stem-loop oan-let-7d


Accession
MI0006934
Description
Ornithorhynchus anatinus oan-let-7d precursor miRNA
Gene family
MIPF0000002; let-7


Sequence

83158 reads, 1667 reads per million, 5 experiments
gaagaaacuaugggcuccuaggaAGAGGUAGUAGGUUGCAUAGUUuuagggcagugauuuugcucauaagguguuaaCUAUACAACCUGCUGCCUUUCUuagggcuuuauuauuac
...........((((.(((((((.((((((((((((((.(((((((((((((((.....)))))).)))......)))))).))))))))))))))))))))))))).........

Structure
gaagaaacuau    u       A              C      ------   -      u 
           gggc ccuagga GAGGUAGUAGGUUG AUAGUU      uua gggcag g
           |||| ||||||| |||||||||||||| ||||||      ||| |||||| a
           uucg ggauUCU UUCCGUCGUCCAAC UAUCaa      aau cucguu u
--cauuauuau    -       -              A      uugugg   a      u 


Annotation confidence High
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Genome context
X1: 34976975-34977090 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from oan-let-7d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-let-7d-5p

Accession MIMAT0007234
Description Ornithorhynchus anatinus oan-let-7d-5p mature miRNA
Sequence 24 - AGAGGUAGUAGGUUGCAUAGUU - 45
Evidence experimental
Illumina [1]
Database links

Mature oan-let-7d-3p

Accession MIMAT0007235
Description Ornithorhynchus anatinus oan-let-7d-3p mature miRNA
Sequence 78 - CUAUACAACCUGCUGCCUUUCU - 99
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004