miRBase entry: oan-mir-146a

Stem-loop oan-mir-146a


Accession
MI0006931
Description
Ornithorhynchus anatinus oan-mir-146a precursor miRNA
Gene family
MIPF0000103; mir-146


Sequence

12683 reads, 390 reads per million, 5 experiments
uucaacuuggagauucaguacgcucagcuuUGAGAACUGAAUUCCACGGGUUgugauugcaacucugacagACCCGUGGGGCUCAGUUCUUGAgcugggguaccucuguccucgcagaauccaggagaa
.....((((((......((((.((((((((.(((((((((.(((((((((((((.............))).)))))))))).))))))))))))))))))))).(((((....))))).))))))....

Structure
uucaa      ----------gauuca    g        U         A          -   gauug 
     cuugga                guac cucagcuu GAGAACUGA UUCCACGGGU Ugu     c
     ||||||                |||| |||||||| ||||||||| |||||||||| |||     a
     ggaccu                caug gggucgAG UUCUUGACU GGGGUGCCCA aca     a
-aaga      aagacgcuccugucuc    -        -         C          g   gucuc 


Annotation confidence High
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Genome context
X1: 22404743-22404871 [-]

Database links

Mature oan-miR-146a-5p

Accession MIMAT0007230
Description Ornithorhynchus anatinus oan-miR-146a-5p mature miRNA
Sequence 31 - UGAGAACUGAAUUCCACGGGUU - 52
Evidence experimental
Illumina [1]

Mature oan-miR-146a-3p

Accession MIMAT0007231
Description Ornithorhynchus anatinus oan-miR-146a-3p mature miRNA
Sequence 72 - ACCCGUGGGGCUCAGUUCUUGA - 93
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004