Stem-loop oan-mir-103-1

Accession

MI0006930

Description

Ornithorhynchus anatinus oan-mir-103-1 precursor miRNA

Gene family

MIPF0000024; mir-103

Sequence

411585 reads, 6638 reads per million, 5 experiments

cuugaacuguaaacauguggaagauugcuccuugcccUCGGCUUCUUUACAGUGCUGCCUUGuugcauauggaucaAGCAGCAUUGUACAGGGCUAUGAgggcauugagacuuuaucuucaaag
...................((((((..(((..(((((((((((.((.(((((((((((.(((.(.(....).).)))))))))))))).))))))..)))))))..))).....))))))....

Structure

cuugaacuguaaacaugug      ---ug   cu       --    U  U           C   u g a 
                   gaagau     cuc  ugcccUC  GGCU CU UACAGUGCUGC UUG u c u
                   ||||||     |||  |||||||  |||| || ||||||||||| ||| | |  
                   cuucua     gag  acgggAG  UCGG GA AUGUUACGACG Aac a g a
---------------gaaa      uuuca   uu       UA    -  C           -   u g u 

Annotation confidence High

Genome context

X1: 17065005-17065128 [+]

Mature oan-miR-103-3p

• Accession: MIMAT0006942
• Description: Ornithorhynchus anatinus oan-miR-103-3p mature miRNA
• Sequence: 77 - AGCAGCAUUGUACAGGGCUAUGA - 99
• Evidence: experimental ; Illumina [1-2]

Mature oan-miR-103-1-5p

• Accession: MIMAT0031098
• Description: Ornithorhynchus anatinus oan-miR-103-1-5p mature miRNA
• Sequence: 38 - UCGGCUUCUUUACAGUGCUGCCUUG - 62
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45