miRBase entry: oan-mir-1409

Stem-loop oan-mir-1409


Accession
MI0006927
Description
Ornithorhynchus anatinus oan-mir-1409 precursor miRNA


Sequence

570 reads, 18 reads per million, 3 experiments
ggcuuugggaggcAAGGGAACUUCUUCUCGCUGAauaaggaaaugccguuuCAGCGCACUCAAGUUCUCAUGCcucccucugcu
(((...((((((((.((((((((.....(((((((...((.....))..))))))).....)))))))).))))))))...)))

Structure
   uuu        A        CUUCU       uaa  a 
ggc   gggaggcA GGGAACUU     CGCUGAa   gg a
|||   |||||||| ||||||||     |||||||   || a
ucg   cccucCGU CUCUUGAA     GCGACuu   cc u
   ucu        A        CUCAC       -ug  g 


Annotation confidence High
Do you think this miRNA is real?

Genome context
Contig102: 73900-73983 [-]

Database links

Mature oan-miR-1409-5p

Accession MIMAT0007226
Description Ornithorhynchus anatinus oan-miR-1409-5p mature miRNA
Sequence 14 - AAGGGAACUUCUUCUCGCUGA - 34
Evidence experimental
Illumina [1]

Mature oan-miR-1409-3p

Accession MIMAT0007227
Description Ornithorhynchus anatinus oan-miR-1409-3p mature miRNA
Sequence 52 - CAGCGCACUCAAGUUCUCAUGC - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004