Stem-loop oan-mir-138-2

Accession

MI0006922

Description

Ornithorhynchus anatinus oan-mir-138-2 precursor miRNA

Gene family

MIPF0000075; mir-138

Sequence

102668 reads, 1959 reads per million, 5 experiments

gacgcucacucugguaucggugcugcAGCUGGUGUUGUGAAUCAGGCCGacgagcagcgaguccuaauacccgGCUAUUUCACUACACCAGGGUugcaucauaccacuccgcuuc
...((......((((((.(((((.((..(((((((.(((((...(((((......................)))))..))))).))))))).)).)))))))))))....))...

Structure

gac  ucacuc      c     u  AG       U     UCA     acgagcagcg 
   gc      ugguau ggugc gc  CUGGUGU GUGAA   GGCCG          a
   ||      |||||| ||||| ||  ||||||| |||||   |||||           
   cg      accaua cuacg UG  GACCACA CACUU   UCGgc          g
cuu  --ccuc      -     u  -G       U     -UA     ccauaauccu 

Annotation confidence High

Genome context

Ultra517: 7784856-7784970 [+]

Mature oan-miR-138-5p

• Accession: MIMAT0007216
• Description: Ornithorhynchus anatinus oan-miR-138-5p mature miRNA
• Sequence: 27 - AGCUGGUGUUGUGAAUCAGGCCG - 49
• Evidence: experimental ; Illumina [1]

Mature oan-miR-138-3p

• Accession: MIMAT0007220
• Description: Ornithorhynchus anatinus oan-miR-138-3p mature miRNA
• Sequence: 74 - GCUAUUUCACUACACCAGGGU - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004