miRBase entry: oan-mir-1403

Stem-loop oan-mir-1403


Accession
MI0006915
Description
Ornithorhynchus anatinus oan-mir-1403 precursor miRNA


Sequence

231 reads, 5 reads per million, 4 experiments
caaggggaggagagggugcaaccaggugugacuauccugagggcgggagcugcagguguccauacccgggcacggguccaaaugugaauaucagaggcccGUCUCCAGGUGUGAACAUCGGUggcgccgguuccuacaucuaug
..(((..(((((..(((((.(((.((((((((...((((..(((....))).)))).)))((((((.(((.(((((((....(.(((...))).)))))))).))).)))))).)))))))).)))))..)))))...)))...

Structure
-ca   -gg     ag     a   a     gacuauccugagggcgggagcugcagguguc      c   c       caaa g   a 
   agg   aggag  ggugc acc ggugu                               cauacc ggg acggguc    u uga  
   |||   |||||  ||||| ||| |||||                               |||||| ||| |||||||    | ||| u
   ucu   uccuu  ccgcg UGG CUACA                               GUGUGG CCU UGcccgg    a acu  
gua   aca     gg     g   -     ------------------------------A      A   C       ---- g   a 


Annotation confidence Not enough data
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Genome context
Ultra487: 212129-212272 [+]

Database links

Mature oan-miR-1403

Accession MIMAT0007210
Description Ornithorhynchus anatinus oan-miR-1403 mature miRNA
Sequence 101 - GUCUCCAGGUGUGAACAUCGGU - 122
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004