miRBase entry: oan-mir-1401

Stem-loop oan-mir-1401


Accession
MI0006913
Description
Ornithorhynchus anatinus oan-mir-1401 precursor miRNA


Sequence

8692 reads, 276 reads per million, 4 experiments
gaggucaugcgaggauagcugUUUCUGACCACCACCGGCCUCUuccuucccaucaguguuagAGGCCAAUGGCAGUCAGAAAUggcucgccuuggcucuc
(((((((....(((..(((((((((((((..(((..(((((((..(...........)..)))))))..)))..)))))))))))))..))))))).)))

Structure
   -    ugcg   au             CA   CC       uc uucc 
gag guca    agg  agcugUUUCUGAC  CCA  GGCCUCU  c    c
||| ||||    |||  |||||||||||||  |||  |||||||  |    a
cuc cggu    ucc  ucggUAAAGACUG  GGU  CCGGAga  g    u
   u    ----   gc             AC   AA       uu ugac 


Annotation confidence High
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Genome context
Ultra474: 4573082-4573181 [+]

Database links

Mature oan-miR-1401-5p

Accession MIMAT0007207
Description Ornithorhynchus anatinus oan-miR-1401-5p mature miRNA
Sequence 22 - UUUCUGACCACCACCGGCCUCU - 43
Evidence experimental
Illumina [1]
Database links

Mature oan-miR-1401-3p

Accession MIMAT0007208
Description Ornithorhynchus anatinus oan-miR-1401-3p mature miRNA
Sequence 63 - AGGCCAAUGGCAGUCAGAAAU - 83
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004