miRBase entry: oan-mir-1400

Stem-loop oan-mir-1400


Accession
MI0006912
Description
Ornithorhynchus anatinus oan-mir-1400 precursor miRNA


Sequence

84 reads, 4 reads per million, 4 experiments
uggcccaaagacaugggcgcaugaacaggGAUGGACAGGGUAUGGGAGgagacugcauucuuucugcuCAUCCCACUCCAAUCCAUCCAuguccccguuccuacacccca
(((.....((..(((((.(((((.....(((((((..(((.(((((.(((((........))))).))))))))..))).))))...))))).)))))..)).....)))

Structure
   cccaa  ac     c     aacag    -   CA   U     A     cug 
ugg     ag  auggg gcaug     gGAU GGA  GGG AUGGG Ggaga   c
|||     ||  ||||| |||||     |||| |||  ||| ||||| |||||    
acc     uc  ugccc uguAC     CCUA CCU  CCC UACuc ucuuu   a
   ccaca  cu     c     --CUA    A   CA   -     g     cuu 


Annotation confidence High
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Genome context
Ultra474: 1170064-1170173 [-]

Database links

Mature oan-miR-1400-5p

Accession MIMAT0007205
Description Ornithorhynchus anatinus oan-miR-1400-5p mature miRNA
Sequence 30 - GAUGGACAGGGUAUGGGAG - 48
Evidence experimental
Illumina [1]

Mature oan-miR-1400-3p

Accession MIMAT0007206
Description Ornithorhynchus anatinus oan-miR-1400-3p mature miRNA
Sequence 69 - CAUCCCACUCCAAUCCAUCCA - 89
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004