miRBase entry: oan-mir-135a

Stem-loop oan-mir-135a


Accession
MI0006902
Description
Ornithorhynchus anatinus oan-mir-135a precursor miRNA
Gene family
MIPF0000028; mir-135


Sequence

14945 reads, 305 reads per million, 5 experiments
ugaucaagauaaauucacucuaguguuuuauggcuuuuuauuccuaugugauaguaauaaagucucAUGUAGGGAUGGAAGCCAUGAaauacauugugaaaaaucauca
.......(((...(((((....((((((((((((((((.((((((((((((.(.(.....).).))))))))))))))))))))))))))))...)))))..)))....

Structure
ugaucaa   aaa     ucua                u            u g a 
       gau   uucac    guguuuuauggcuuuu auuccuauguga a u a
       |||   |||||    |||||||||||||||| |||||||||||| | | u
       cua   aagug    cauaaAGUACCGAAGG UAGGGAUGUAcu u a a
---acua   -aa     -uua                -            c g a 


Annotation confidence High
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Genome context
Ultra443: 6813027-6813135 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from oan-mir-135a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-135a-3p

Accession MIMAT0007193
Description Ornithorhynchus anatinus oan-miR-135a-3p mature miRNA
Sequence 67 - AUGUAGGGAUGGAAGCCAUGA - 87
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004