miRBase entry: oan-mir-99

Stem-loop oan-mir-99


Accession
MI0006897
Description
Ornithorhynchus anatinus oan-mir-99 precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

94475 reads, 1862 reads per million, 5 experiments
gugugauaaugccaguuggcauaAACCCGUAGAUCCGAUCUUGUggugaagugaaauacaCAAGCUCGCCUCUCUGGGUCUGugucagugugguaaucggac
((.((((..(((((.((((((((.(((((.(((..(((.((((((.............)))))).)))..))).))))).))))))))..))))))))).))

Structure
  g    aa     -g        A     U   UC   U      gugaa 
gu ugau  ugcca  uuggcaua ACCCG AGA  CGA CUUGUg     g
|| ||||  |||||  |||||||| ||||| |||  ||| ||||||     u
ca gcua  auggu  gacuguGU UGGGU UCU  GCU GAACac     g
  g    --     gu        C     C   CC   C      auaaa 


Annotation confidence High
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Genome context
Ultra41: 2045338-2045439 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oan-mir-99
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-99-5p

Accession MIMAT0007183
Description Ornithorhynchus anatinus oan-miR-99-5p mature miRNA
Sequence 24 - AACCCGUAGAUCCGAUCUUGU - 44
Evidence experimental
Illumina [1]
Database links

Mature oan-miR-99-3p

Accession MIMAT0007184
Description Ornithorhynchus anatinus oan-miR-99-3p mature miRNA
Sequence 61 - CAAGCUCGCCUCUCUGGGUCUG - 82
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004