miRBase entry: oan-mir-98

Stem-loop oan-mir-98


Accession
MI0006894
Description
Ornithorhynchus anatinus oan-mir-98 precursor miRNA
Gene family
MIPF0000002; let-7


Sequence

9614 reads, 185 reads per million, 5 experiments
ucguaagcugucagugugcccaugcugggaUGAGGUAGUAAGUUGUAUUGUUgugggguagggauuucuuuugccccaauuagcgauaacuauacaauuuacuacuuuccccaguguguggaacgaucacuggguccuaguguaaccga
(((...((((((((((..(((((((((((..(((((((((((((((((.((((((((((((((.....))))))))))........)))).))))))))))))))))).))))))))).))......))))))....)))).....)))

Structure
   --uaa    ----      ----ug  -         aU                 U    --------          a 
ucg     gcug    ucagug      cc caugcuggg  GAGGUAGUAAGUUGUAU GUUg        ugggguaggg u
|||     ||||    ||||||      || |||||||||  ||||||||||||||||| ||||        |||||||||| u
agc     ugau    ggucac      gg gugugaccc  uuucaucauuuaacaua caau        accccguuuu u
   caaug    ccug      uagcaa  u         -c                 u    agcgauua          c 


Annotation confidence Not enough data
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Genome context
Ultra403: 71661-71809 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from oan-mir-98
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-98

Accession MIMAT0007178
Description Ornithorhynchus anatinus oan-miR-98 mature miRNA
Sequence 31 - UGAGGUAGUAAGUUGUAUUGUU - 52
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004