miRBase entry: oan-mir-1389

Stem-loop oan-mir-1389


Accession
MI0006891
Description
Ornithorhynchus anatinus oan-mir-1389 precursor miRNA


Sequence

137 reads, 5 reads per million, 5 experiments
cggaauuggccgaucccggcuuguuCCUCGGCGUUUCCGGCACGGCCAagugaugcguuucugACUGGGCUGGAAAAUCGAGUGAacuggccagggagcuccaggucagccg
(((..((((((..((((((((.(((((((((..((((((((.(((.((...((......)))).))).)))))))).))))).)))).)))).))))......)))))))))

Structure
   aa      ----ga    -    u    -     CG        A   C  agu  ug 
cgg  uuggcc      uccc ggcu guuC CUCGG  UUUCCGGC CGG CA   ga  c
|||  ||||||      |||| |||| |||| |||||  |||||||| ||| ||   ||   
gcc  gacugg      aggg ccgg caAG GAGCU  AAAGGUCG GUC gu   cu  g
   --      accucg    a    u    U     -A        G   A  ---  uu 


Annotation confidence Not enough data
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Genome context
Ultra341: 9461664-9461775 [+]

Database links

Mature oan-miR-1389-3p

Accession MIMAT0007174
Description Ornithorhynchus anatinus oan-miR-1389-3p mature miRNA
Sequence 64 - ACUGGGCUGGAAAAUCGAGUGA - 85
Evidence experimental
Illumina [1-2]

Mature oan-miR-1389-5p

Accession MIMAT0026758
Description Ornithorhynchus anatinus oan-miR-1389-5p mature miRNA
Sequence 26 - CCUCGGCGUUUCCGGCACGGCCA - 48
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45