Stem-loop oan-mir-199

Accession

MI0006890

Description

Ornithorhynchus anatinus oan-mir-199 precursor miRNA

Gene family

MIPF0000040; mir-199

Sequence

23427 reads, 872 reads per million, 5 experiments

uagaagcguccggagauccugcuccgucgcCCCAGUGUUCAGACUACCUGUUcaggacaaugcuguuguACAGUAGUCUGCACAUUGGUUagacugggcaagggaaagcggcgaaaug
......((.(((....((((((((.(((...(((((((.((((((((.(((....((((....))))..))))))))))).)))))))...))).)))).))))....))))).....

Structure

uagaag  u   gaga    -    c   gcC       U        C   Ucag    a 
      cg ccg    uccu gcuc guc   CCAGUGU CAGACUAC UGU    gaca u
      || |||    |||| |||| |||   ||||||| |||||||| |||    ||||  
      gc ggc    ggga cggg cag   GGUUACA GUCUGAUG ACA    uugu g
-guaaa  -   gaaa    a    u   aUU       C        -   --ug    c 

Annotation confidence High

Genome context

Ultra341: 2337896-2338013 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oan-mir-199

Mature oan-miR-199-5p

• Accession: MIMAT0007172
• Description: Ornithorhynchus anatinus oan-miR-199-5p mature miRNA
• Sequence: 31 - CCCAGUGUUCAGACUACCUGUU - 52
• Evidence: experimental ; Illumina [1]

Mature oan-miR-199-3p

• Accession: MIMAT0007173
• Description: Ornithorhynchus anatinus oan-miR-199-3p mature miRNA
• Sequence: 70 - ACAGUAGUCUGCACAUUGGUU - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004