miRBase entry: oan-mir-425

Stem-loop oan-mir-425


Accession
MI0006880
Description
Ornithorhynchus anatinus oan-mir-425 precursor miRNA
Gene family
MIPF0000242; mir-425


Sequence

4675 reads, 99 reads per million, 5 experiments
gggagagaaaucgcuuuggAAUGACACGAUCACUCCCGUUGAgcggacagccaagaagcCAUCGGGAAUAUCGUGUCCGuccaaagcucuuucggggccuccc
..((((((....((((((((..((((((((...(((((.((.((.............)))).)))))..))))))))..))))))))))))))(((....)))

Structure
--------gg      aauc        AU        CAC     U  A  ggaca 
          gagaga    gcuuuggA  GACACGAU   UCCCG UG gc     g
          ||||||    ||||||||  ||||||||   ||||| || ||     c
          cuuucu    cgaaaccu  CUGUGCUA   AGGGC AC cg     c
cccuccgggg      ----        GC        -UA     U  -  aagaa 


Annotation confidence High
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Genome context
Ultra32: 75903-76005 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oan-mir-425
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-425-5p

Accession MIMAT0007154
Description Ornithorhynchus anatinus oan-miR-425-5p mature miRNA
Sequence 20 - AAUGACACGAUCACUCCCGUUGA - 42
Evidence experimental
Illumina [1]

Mature oan-miR-425-3p

Accession MIMAT0007155
Description Ornithorhynchus anatinus oan-miR-425-3p mature miRNA
Sequence 60 - CAUCGGGAAUAUCGUGUCCG - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004