miRBase entry: oan-mir-1b

Stem-loop oan-mir-1b


Accession
MI0006876
Description
Ornithorhynchus anatinus oan-mir-1b precursor miRNA
Gene family
MIPF0000038; mir-1


Sequence

2714 reads, 52 reads per million, 5 experiments
acacacuucuucauaugcccauagggagcugcccgaacuaUGGAAUGUUAAGAAGUGUGUGU
(((((((((((.((((..((((((((......))...)))))).)))).)))))))))))..

Structure
--           c    gc      ---  ag 
  acacacuucuu auau  ccauag   gg  c
  ||||||||||| ||||  ||||||   ||   
  UGUGUGAAGAA UGUA  GGUauc   cc  u
UG           U    -A      aag  cg 


Annotation confidence Not enough data
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Genome context
Ultra299: 214301-214362 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oan-mir-1b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1b

Accession MIMAT0007149
Description Ornithorhynchus anatinus oan-miR-1b mature miRNA
Sequence 41 - UGGAAUGUUAAGAAGUGUGUGU - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004